[mephi-hpc] Fortran runtime error: File already opened in another unit

anikeev anikeev at ut.mephi.ru
Tue Apr 18 19:30:15 MSK 2017 

On Mon, 2017-04-17 at 19:30 +0300, Phil Korneev wrote:
> Добрый день,

Здравствуйте!

> программа не выдаёт данных. Мне кажется, она просто висит в
> планировщике. 
> Файл энергии /mnt/pool/3/phkorneev/magn_2D_TNSA_3a/etc/energy_00008
> должен обновляться, за время работы, по крайней мере, несколько раз.
> Кроме того, файл /mnt/pool/3/phkorneev/magn_2D_TNSA_3a/timer после
> успешного запуска должен замениться
> на /mnt/pool/3/phkorneev/magn_2D_TNSA_3a/timer_0.
> С уважением,
> к.

Программа завершила работу без ошибок. Файл outout.info обновился.

Необходимо понять, как можно воспроизвести ошибку. Для ускорения
перебора вариантов можно сократить число итераций в стартовых файлах.

Весьма вероятно, что ошибка была связана с одновременным запуском
задач, работающих одновременно с одним фалом. По окончании второго
процесса первый стал работать корректно.

Я бы рекомендовал поискать в исходном коде открытие файлов без
проверок. Речь может идти не только о файлах пользователя, но и о
служебных файлах, которые могут использоваться для межпроцессного
взаимодействия.

> 2017-04-17 19:04 GMT+03:00 anikeev <anikeev at ut.mephi.ru>:
> > On Mon, 2017-04-17 at 14:26 +0300, anikeev wrote:
> > > On Mon, 2017-04-17 at 13:04 +0300, Phil Korneev wrote:
> > > > Добрый день, ошибка повторилась:
> > > > At line 254 of file em2d.f (unit = 10, file = '')
> > > > Fortran runtime error: File already opened in another unit
> > 
> > От Вашего пользователя программа работает без ошибок длительное
> > время.
> > 
> > Job ID                    Name             User            Time Use
> > S
> > Queue
> > ------------------------- ---------------- --------------- --------
> > -
> > -----
> > 24735.master               mtnsa_2D3        phkorneev       469:45:
> > 2 R
> > medium
> > 
> > Пока диагностировать нечего. Жду проявления ошибки.
> > 
> > > У меня возникают множественные SegFault. Я создам ещё одну копию
> > и
> > > запущу задачу от Вашего пользователя, чтобы избавиться от
> > побочных
> > > проблем.
> > >
> > > > Для диагностики, чтобы не повредить данные, можно либо
> > скопировать
> > > > директорию /mnt/pool/3/phkorneev/magn_2D_TNSA_3a/ в новую
> > > > (необходимо
> > > > скопировать "restart", "ipicls" , файл "timer" и скрипт
> > > > "task_basov")
> > > > и запускать оттуда, или запускать из текущей директории, но
> > файл
> > > > "timer" при начале счёта заменяется на "timer_0", поэтому для
> > > > сохранения данных желательно следить за ним и при необходимости
> > > > перед
> > > > запуском переименовывать в "timer".
> > > > Проще всего сделать резервное копирование директории, мне
> > кажется,
> > > > а
> > > > когда проблема будет решена, удалить все новые данные.
> > > > Я уже всё сохранил на всякий случай в
> > > > "/mnt/pool/3/phkorneev/magn_2D_TNSA_3a_cc"
> > > > с уважением,
> > > > к.
> > > >
> > > >
> > > > 2017-04-17 12:06 GMT+03:00 anikeev <anikeev at ut.mephi.ru>:
> > > > > On Sat, 2017-04-15 at 12:37 +0300, Phil Korneev wrote:
> > > > > > Добрый день,
> > > > > > подскажите пожалуйста, что это значит (ниже - содержание
> > error
> > > > > > -
> > > > > > файла) и как с этим бороться?
> > > > > > Задача на cherenkov, эта ошибка возникает всегда сегодня с
> > > > > > утра,
> > > > > > пробовал запустить около 10 раз. Вчера задача считалась.
> > > > >
> > > > > Добрый день!
> > > > >
> > > > > На кластере произошёл инцидент с переполнением хранилища.
> > > > > Попробуйте,
> > > > > пожалуйста, запустить задачу ещё раз. В случае повторения
> > ошибки,
> > > > > сообщите, как мне запустить задачу для дальнейшей
> > диагностики,
> > > > > чтобы не
> > > > > повредить Ваши данные.
> > > > >
> > > > > > Спасибо!
> > > > > > к
> > > > > >
> > > > >
> > > > >
> > _________________________________________________________________
> > > > > __
> > > > > __
> > > > > > __
> > > > > > At line 254 of file em2d.f (unit = 10, file = 'H����*')
> > > > > > Fortran runtime error: File already opened in another unit
> > > > > > ---------------------------------------------------------
> > ------
> > > > >
> > > > > ----
> > > > > > -------
> > > > > > mpirun has exited due to process rank 0 with PID 15890 on
> > > > > > node n217 exiting improperly. There are two reasons this
> > could
> > > > >
> > > > > occur:
> > > > > >
> > > > > > 1. this process did not call "init" before exiting, but
> > others
> > > > > > in
> > > > > > the job did. This can cause a job to hang indefinitely
> > while it
> > > > >
> > > > > waits
> > > > > > for all processes to call "init". By rule, if one process
> > calls
> > > > > > "init",
> > > > > > then ALL processes must call "init" prior to termination.
> > > > > >
> > > > > > 2. this process called "init", but exited without calling
> > > > >
> > > > > "finalize".
> > > > > > By rule, all processes that call "init" MUST call
> > "finalize"
> > > > >
> > > > > prior to
> > > > > > exiting or it will be considered an "abnormal termination"
> > > > > >
> > > > > > This may have caused other processes in the application to
> > be
> > > > > > terminated by signals sent by mpirun (as reported here).
> > > > > > ---------------------------------------------------------
> > ------
> > > > >
> > > > > ----
> > > > > > -------
> > > > > >
> > > > >
> > > > >
> > _________________________________________________________________
> > > > > __
> > > > > __
> > > > > > __
> > > > > >
> > > > > > -- 
> > > > > > All the best , 
> > > > > > Philipp K
> > > > > > _______________________________________________
> > > > > > hpc mailing list
> > > > > > hpc at lists.mephi.ru
> > > > > > https://lists.mephi.ru/listinfo/hpc
> > > > >
> > > > > --
> > > > > С уважением,
> > > > > аспирант кафедры 4 МИФИ,
> > > > > инженер отдела Unix-технологий,
> > > > > Аникеев Артём.
> > > > > Тел.: 8 (495) 788-56-99, доб. 8998
> > > > > _______________________________________________
> > > > > hpc mailing list
> > > > > hpc at lists.mephi.ru
> > > > > https://lists.mephi.ru/listinfo/hpc
> > > > >
> > > >
> > > >
> > > >
> > > > -- 
> > > > All the best , 
> > > > Philipp K
> > > > _______________________________________________
> > > > hpc mailing list
> > > > hpc at lists.mephi.ru
> > > > https://lists.mephi.ru/listinfo/hpc
> > >
> > > _______________________________________________
> > > hpc mailing list
> > > hpc at lists.mephi.ru
> > > https://lists.mephi.ru/listinfo/hpc
> > --
> > С уважением,
> > аспирант кафедры 4 МИФИ,
> > инженер отдела Unix-технологий,
> > Аникеев Артём.
> > Тел.: 8 (495) 788-56-99, доб. 8998
> > _______________________________________________
> > hpc mailing list
> > hpc at lists.mephi.ru
> > https://lists.mephi.ru/listinfo/hpc
> > 
> 
> 
> 
> -- 
> All the best , 
> Philipp K
> _______________________________________________
> hpc mailing list
> hpc at lists.mephi.ru
> https://lists.mephi.ru/listinfo/hpc
-- 
С уважением,
аспирант кафедры 4 МИФИ,
инженер отдела Unix-технологий,
Аникеев Артём.
Тел.: 8 (495) 788-56-99, доб. 8998
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Note: The following floating-point exceptions are signalling: IEEE_DIVIDE_BY_ZERO IEEE_UNDERFLOW_FLAG IEEE_DENORMAL
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Note: The following floating-point exceptions are signalling: IEEE_DIVIDE_BY_ZERO IEEE_DENORMAL
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Note: The following floating-point exceptions are signalling: IEEE_DIVIDE_BY_ZERO IEEE_DENORMAL
Note: The following floating-point exceptions are signalling: IEEE_DIVIDE_BY_ZERO IEEE_UNDERFLOW_FLAG IEEE_DENORMAL
Note: The following floating-point exceptions are signalling: IEEE_DIVIDE_BY_ZERO IEEE_DENORMAL
Note: The following floating-point exceptions are signalling: IEEE_DIVIDE_BY_ZERO IEEE_DENORMAL
Note: The following floating-point exceptions are signalling: IEEE_DIVIDE_BY_ZERO IEEE_UNDERFLOW_FLAG IEEE_DENORMAL
Note: The following floating-point exceptions are signalling: IEEE_DIVIDE_BY_ZERO IEEE_DENORMAL
Note: The following floating-point exceptions are signalling: IEEE_DIVIDE_BY_ZERO IEEE_DENORMAL
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Note: The following floating-point exceptions are signalling: IEEE_DIVIDE_BY_ZERO IEEE_DENORMAL
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Note: The following floating-point exceptions are signalling: IEEE_DIVIDE_BY_ZERO IEEE_DENORMAL
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Note: The following floating-point exceptions are signalling: IEEE_DIVIDE_BY_ZERO IEEE_DENORMAL
Note: The following floating-point exceptions are signalling: IEEE_DIVIDE_BY_ZERO IEEE_DENORMAL
Note: The following floating-point exceptions are signalling: IEEE_DIVIDE_BY_ZERO IEEE_DENORMAL
Note: The following floating-point exceptions are signalling: IEEE_DIVIDE_BY_ZERO IEEE_DENORMAL
Note: The following floating-point exceptions are signalling: IEEE_DIVIDE_BY_ZERO IEEE_DENORMAL
Note: The following floating-point exceptions are signalling: IEEE_DIVIDE_BY_ZERO IEEE_DENORMAL
Note: The following floating-point exceptions are signalling: IEEE_DIVIDE_BY_ZERO IEEE_DENORMAL
Note: The following floating-point exceptions are signalling: IEEE_DIVIDE_BY_ZERO IEEE_DENORMAL
Note: The following floating-point exceptions are signalling: IEEE_DIVIDE_BY_ZERO IEEE_DENORMAL
Note: The following floating-point exceptions are signalling: IEEE_DIVIDE_BY_ZERO IEEE_DENORMAL
Note: The following floating-point exceptions are signalling: IEEE_DIVIDE_BY_ZERO IEEE_UNDERFLOW_FLAG IEEE_DENORMAL
Note: The following floating-point exceptions are signalling: IEEE_DIVIDE_BY_ZERO IEEE_DENORMAL
Note: The following floating-point exceptions are signalling: IEEE_DIVIDE_BY_ZERO IEEE_DENORMAL
Note: The following floating-point exceptions are signalling: IEEE_DIVIDE_BY_ZERO IEEE_UNDERFLOW_FLAG IEEE_DENORMAL
Note: The following floating-point exceptions are signalling: IEEE_DIVIDE_BY_ZERO IEEE_UNDERFLOW_FLAG IEEE_DENORMAL
Note: The following floating-point exceptions are signalling: IEEE_INVALID_FLAG IEEE_DIVIDE_BY_ZERO IEEE_UNDERFLOW_FLAG IEEE_DENORMAL
Note: The following floating-point exceptions are signalling: IEEE_INVALID_FLAG IEEE_DIVIDE_BY_ZERO IEEE_DENORMAL
 IEEE_INVALID_FLAG IEEE_DIVIDE_BY_ZERO IEEE_DENORMAL
Note: The following floating-point exceptions are signalling: IEEE_DIVIDE_BY_ZERO IEEE_UNDERFLOW_FLAG IEEE_DENORMAL
Note: The following floating-point exceptions are signalling: IEEE_INVALID_FLAG IEEE_DIVIDE_BY_ZERO IEEE_DENORMAL
Note: The following floating-point exceptions are signalling: IEEE_INVALID_FLAG IEEE_DIVIDE_BY_ZERO IEEE_UNDERFLOW_FLAG IEEE_DENORMAL
-------------- next part --------------
directory densdata exists.
directory fields exists.
directory restart exists.
directory gmns exists.
directory dnss exists.
directory emps exists.
directory emss exists.
directory empi exists.
directory emsi exists.
directory emes exists.
directory rjcs exists.
directory rjci exists.
directory phs exists.
directory etc exists.

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